Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
Identifieur interne : 000139 ( Main/Exploration ); précédent : 000138; suivant : 000140Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
Auteurs : Maxim Prokchorchik [Corée du Sud] ; Ankita Pandey [Corée du Sud] ; Hayoung Moon [Corée du Sud] ; Wanhui Kim [Corée du Sud] ; Hyelim Jeon [Corée du Sud] ; Gayoung Jung [Corée du Sud] ; Jay Jayaraman [Nouvelle-Zélande] ; Stephen Poole [États-Unis] ; Cécile Segonzac [Corée du Sud] ; Kee Hoon Sohn [Corée du Sud] ; Honour C. Mccann [Nouvelle-Zélande, Allemagne]Source :
- Microbial genomics [ 2057-5858 ] ; 2020.
Abstract
Bacterial wilt caused by the Ralstonia solanacearum species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (R. pseudosolanacearum) strains isolated from pepper (Capsicum annuum) and tomato (Solanum lycopersicum) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in Ralstonia evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.
DOI: 10.1099/mgen.0.000461
PubMed: 33151139
Affiliations:
- Allemagne, Corée du Sud, Nouvelle-Zélande, États-Unis
- Bade-Wurtemberg, Californie, District de Tübingen, Région capitale de Séoul
- Santa Barbara (Californie), Séoul, Tübingen
- Université de Californie à Santa Barbara, Université nationale de Séoul
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</title><author><name sortKey="Prokchorchik, Maxim" sort="Prokchorchik, Maxim" uniqKey="Prokchorchik M" first="Maxim" last="Prokchorchik">Maxim Prokchorchik</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Pandey, Ankita" sort="Pandey, Ankita" uniqKey="Pandey A" first="Ankita" last="Pandey">Ankita Pandey</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Moon, Hayoung" sort="Moon, Hayoung" uniqKey="Moon H" first="Hayoung" last="Moon">Hayoung Moon</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Jung, Gayoung" sort="Jung, Gayoung" uniqKey="Jung G" first="Gayoung" last="Jung">Gayoung Jung</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Jayaraman, Jay" sort="Jayaraman, Jay" uniqKey="Jayaraman J" first="Jay" last="Jayaraman">Jay Jayaraman</name><affiliation wicri:level="1"><nlm:affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>The New Zealand Institute for Plant and Food Research, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Poole, Stephen" sort="Poole, Stephen" uniqKey="Poole S" first="Stephen" last="Poole">Stephen Poole</name><affiliation wicri:level="4"><nlm:affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara</wicri:regionArea><orgName type="university">Université de Californie à Santa Barbara</orgName><placeName><settlement type="city">Santa Barbara (Californie)</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name><affiliation wicri:level="1"><nlm:affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name><affiliation wicri:level="1"><nlm:affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>New Zealand Institute for Advanced Study, Massey University Albany</wicri:regionArea><wicri:noRegion>Massey University Albany</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Max Planck Institute for Developmental Biology, Tübingen</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Tübingen</region><settlement type="city">Tübingen</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:33151139</idno><idno type="pmid">33151139</idno><idno type="doi">10.1099/mgen.0.000461</idno><idno type="wicri:Area/Main/Corpus">000017</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000017</idno><idno type="wicri:Area/Main/Curation">000017</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000017</idno><idno type="wicri:Area/Main/Exploration">000017</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</title><author><name sortKey="Prokchorchik, Maxim" sort="Prokchorchik, Maxim" uniqKey="Prokchorchik M" first="Maxim" last="Prokchorchik">Maxim Prokchorchik</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Pandey, Ankita" sort="Pandey, Ankita" uniqKey="Pandey A" first="Ankita" last="Pandey">Ankita Pandey</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Moon, Hayoung" sort="Moon, Hayoung" uniqKey="Moon H" first="Hayoung" last="Moon">Hayoung Moon</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Jung, Gayoung" sort="Jung, Gayoung" uniqKey="Jung G" first="Gayoung" last="Jung">Gayoung Jung</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Jayaraman, Jay" sort="Jayaraman, Jay" uniqKey="Jayaraman J" first="Jay" last="Jayaraman">Jay Jayaraman</name><affiliation wicri:level="1"><nlm:affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>The New Zealand Institute for Plant and Food Research, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Poole, Stephen" sort="Poole, Stephen" uniqKey="Poole S" first="Stephen" last="Poole">Stephen Poole</name><affiliation wicri:level="4"><nlm:affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara</wicri:regionArea><orgName type="university">Université de Californie à Santa Barbara</orgName><placeName><settlement type="city">Santa Barbara (Californie)</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><affiliation wicri:level="4"><nlm:affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Plant Immunity Research Center, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name><affiliation wicri:level="1"><nlm:affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673</wicri:regionArea><wicri:noRegion>Pohang 37673</wicri:noRegion></affiliation></author><author><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name><affiliation wicri:level="1"><nlm:affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>New Zealand Institute for Advanced Study, Massey University Albany</wicri:regionArea><wicri:noRegion>Massey University Albany</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Max Planck Institute for Developmental Biology, Tübingen</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Tübingen</region><settlement type="city">Tübingen</settlement></placeName></affiliation></author></analytic><series><title level="j">Microbial genomics</title><idno type="eISSN">2057-5858</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bacterial wilt caused by the <i>Ralstonia solanacearum</i> species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (<i>R. pseudosolanacearum</i>) strains isolated from pepper (<i>Capsicum annuum</i>) and tomato (<i>Solanum lycopersicum</i>) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in <i>Ralstonia</i> evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33151139</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>05</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2057-5858</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Nov</Month><Day>05</Day></PubDate></JournalIssue><Title>Microbial genomics</Title><ISOAbbreviation>Microb Genom</ISOAbbreviation></Journal><ArticleTitle>Host adaptation and microbial competition drive <i>Ralstonia solanacearum</i> phylotype I evolution in the Republic of Korea.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1099/mgen.0.000461</ELocationID><Abstract><AbstractText>Bacterial wilt caused by the <i>Ralstonia solanacearum</i> species complex (RSSC) threatens the cultivation of important crops worldwide. We sequenced 30 RSSC phylotype I (<i>R. pseudosolanacearum</i>) strains isolated from pepper (<i>Capsicum annuum</i>) and tomato (<i>Solanum lycopersicum</i>) across the Republic of Korea. These isolates span the diversity of phylotype I, have extensive effector repertoires and are subject to frequent recombination. Recombination hotspots among South Korean phylotype I isolates include multiple predicted contact-dependent inhibition loci, suggesting that microbial competition plays a significant role in <i>Ralstonia</i> evolution. Rapid diversification of secreted effectors presents challenges for the development of disease-resistant plant varieties. We identified potential targets for disease resistance breeding by testing for allele-specific host recognition of T3Es present among South Korean phyloype I isolates. The integration of pathogen population genomics and molecular plant pathology contributes to the development of location-specific disease control and development of plant cultivars with durable resistance to relevant threats.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Prokchorchik</LastName><ForeName>Maxim</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pandey</LastName><ForeName>Ankita</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Moon</LastName><ForeName>Hayoung</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Wanhui</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jeon</LastName><ForeName>Hyelim</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jung</LastName><ForeName>Gayoung</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jayaraman</LastName><ForeName>Jay</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant and Food Research, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Poole</LastName><ForeName>Stephen</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Segonzac</LastName><ForeName>Cécile</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Plant Immunity Research Center, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Science, Plant Genome and Breeding Institute, Agricultural Life Science Research Institute, Seoul National University, Seoul 08826, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sohn</LastName><ForeName>Kee Hoon</ForeName><Initials>KH</Initials><AffiliationInfo><Affiliation>School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Life Sciences, Pohang University of Science and Technology, Pohang 37673, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McCann</LastName><ForeName>Honour C</ForeName><Initials>HC</Initials><AffiliationInfo><Affiliation>New Zealand Institute for Advanced Study, Massey University Albany, New Zealand.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Max Planck Institute for Developmental Biology, Tübingen, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>11</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Microb Genom</MedlineTA><NlmUniqueID>101671820</NlmUniqueID><ISSNLinking>2057-5858</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Ralstonia solanacearum</Keyword><Keyword MajorTopicYN="N">microbial competition</Keyword><Keyword MajorTopicYN="N">pathogen evolution</Keyword><Keyword MajorTopicYN="N">plant–microbe interactions</Keyword><Keyword MajorTopicYN="N">population genomics</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>11</Month><Day>5</Day><Hour>12</Hour><Minute>11</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>11</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>11</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33151139</ArticleId><ArticleId IdType="doi">10.1099/mgen.0.000461</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Corée du Sud</li><li>Nouvelle-Zélande</li><li>États-Unis</li></country><region><li>Bade-Wurtemberg</li><li>Californie</li><li>District de Tübingen</li><li>Région capitale de Séoul</li></region><settlement><li>Santa Barbara (Californie)</li><li>Séoul</li><li>Tübingen</li></settlement><orgName><li>Université de Californie à Santa Barbara</li><li>Université nationale de Séoul</li></orgName></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Prokchorchik, Maxim" sort="Prokchorchik, Maxim" uniqKey="Prokchorchik M" first="Maxim" last="Prokchorchik">Maxim Prokchorchik</name></noRegion><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><name sortKey="Jeon, Hyelim" sort="Jeon, Hyelim" uniqKey="Jeon H" first="Hyelim" last="Jeon">Hyelim Jeon</name><name sortKey="Jung, Gayoung" sort="Jung, Gayoung" uniqKey="Jung G" first="Gayoung" last="Jung">Gayoung Jung</name><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><name sortKey="Kim, Wanhui" sort="Kim, Wanhui" uniqKey="Kim W" first="Wanhui" last="Kim">Wanhui Kim</name><name sortKey="Moon, Hayoung" sort="Moon, Hayoung" uniqKey="Moon H" first="Hayoung" last="Moon">Hayoung Moon</name><name sortKey="Pandey, Ankita" sort="Pandey, Ankita" uniqKey="Pandey A" first="Ankita" last="Pandey">Ankita Pandey</name><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><name sortKey="Segonzac, Cecile" sort="Segonzac, Cecile" uniqKey="Segonzac C" first="Cécile" last="Segonzac">Cécile Segonzac</name><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name><name sortKey="Sohn, Kee Hoon" sort="Sohn, Kee Hoon" uniqKey="Sohn K" first="Kee Hoon" last="Sohn">Kee Hoon Sohn</name></country><country name="Nouvelle-Zélande"><noRegion><name sortKey="Jayaraman, Jay" sort="Jayaraman, Jay" uniqKey="Jayaraman J" first="Jay" last="Jayaraman">Jay Jayaraman</name></noRegion><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name></country><country name="États-Unis"><region name="Californie"><name sortKey="Poole, Stephen" sort="Poole, Stephen" uniqKey="Poole S" first="Stephen" last="Poole">Stephen Poole</name></region></country><country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Mccann, Honour C" sort="Mccann, Honour C" uniqKey="Mccann H" first="Honour C" last="Mccann">Honour C. Mccann</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PlantPathoEffV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000139 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000139 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PlantPathoEffV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:33151139
|texte= Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:33151139" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PlantPathoEffV1
| This area was generated with Dilib version V0.6.38. |  |